How do I set different shipping prices for different item variations?

How do I set different shipping prices for different item variations?

 

We offer items individually, by the retail tray, and by the case for bulk discounts. These can vary in size and weight dramatically and would like to set shipping costs to the customer by variation rather than Priced into the item for transparency. I use the same items across store fronts and online so it is not doable to simply change the price for online. I Started to update the "online price" option, but you can not have a higher price for online than the master price of an item. 

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