Okay that makes sense.
So the next thing that I would do is enable it for production in the WooCommerce Square plug-in.
Make sure you link it to the correct square store location if you have more than one location.
And then run a test placing an order from your website and see if you are still seeing duplicate transactions.
I've never experienced to this issue unless I happen to have multiple connections going, so the steps we have taken, to disconnect the connectors and then reconnect fresh, should be able to clear this all up.
~Cheryl!
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Cheryl! Tisland
Burst Of Butterflies Create & Paint Studio
BurstOfButterflies.com
